PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g030290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 250aa    MW: 28722.5 Da    PI: 6.9041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g030290.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.7e-1470122155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++ +hn+ Er RR++iN+ ++ Lr+llP+ +   + kK+s  ++  k  +YI +Lq
  Sopen10g030290.1  70 KKLNHNASERDRRKKINDLYSSLRSLLPPsD---HMKKPSIPSTISKILKYIPELQ 122
                       6789*************************55...8888***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1569141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.53269121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.05E-1270126No hitNo description
PfamPF000101.3E-1170122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1470135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-975127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLAISSPMIS TNYINFGWLL EDPNSQQINI NPMEPLHSSS RKNLQHSDSN KFDEITINGG  60
DHHQPDQTVK KLNHNASERD RRKKINDLYS SLRSLLPPSD HMKKPSIPST ISKILKYIPE  120
LQSEVERLVQ KKEEFTSTYV FNRQNLGDFT KQKRIKGGIE NSSFVISTSK LSDKEIVVQI  180
STLKINKGSI GEAISQLEDE GLVLLNATSF ETFEDRVFYT LHFQVERSMV VEIDMLRDKL  240
SSYFEKEDKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249748.11e-179PREDICTED: transcription factor bHLH100-like
SwissprotQ9M1K11e-43ORG2_ARATH; Transcription factor ORG2
TrEMBLK4D2K61e-179K4D2K6_SOLLC; Uncharacterized protein
STRINGSolyc10g079650.1.11e-178(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-36bHLH family protein